CEA/DSV/IBeB/SBVME/LEMiRE - P2TF Database - Version 2.9
 

Genomes

Species search
Taxonomy tree-browser
Organism Lineage Transcription Factor misPredicted TF protein
Clostridiales genomosp. BVAB3 str. UPII9-5 Bacteria / Firmicutes / Clostridia / Clostridiales. / 81 0
butyrate-producing bacterium SM4/1 Bacteria / Firmicutes / Clostridia / Clostridiales. / 99 56
butyrate-producing bacterium SS3/4 Bacteria / Firmicutes / Clostridia / Clostridiales. / 175 28
butyrate-producing bacterium SSC/2 Bacteria / Firmicutes / Clostridia / Clostridiales. / 196 40
Syntrophothermus lipocalidus DSM 12680 Bacteria / Firmicutes / Clostridia / Clostridiales / Syntrophomonadaceae / Syntrophothermus. / 106 1
Syntrophomonas wolfei subsp. wolfei str. Goettingen Bacteria / Firmicutes / Clostridia / Clostridiales / Syntrophomonadaceae / Syntrophomonas. / 99 3
Clostridium stercorarium subsp. stercorarium DSM 8532 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / unclassified Ruminococcaceae. / 148 4
Clostridium stercorarium subsp. stercorarium DSM 8532 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / unclassified Ruminococcaceae. / 145 6
Ruminococcus albus 7 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Ruminococcus. / 174 2
Ruminococcus albus 7 plasmid pRUMAL01 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Ruminococcus. / 14 0
Ruminococcus albus 7 plasmid pRUMAL02 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Ruminococcus. / 13 0
Ruminococcus albus 7 plasmid pRUMAL03 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Ruminococcus. / 3 0
Ruminococcus albus 7 plasmid pRUMAL04 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Ruminococcus. / 1 0
Ruminococcus bromii L2-63 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Ruminococcus. / 101 30
Ruminococcus champanellensis 18P13 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Ruminococcus. / 115 21
Ruminococcus sp. SR1/5 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Ruminococcus. / 179 53
Faecalibacterium prausnitzii L2-6 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Faecalibacterium. / 182 43
Faecalibacterium prausnitzii SL3/3 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Faecalibacterium. / 183 30
Ethanoligenens harbinense YUAN-3 Bacteria / Firmicutes / Clostridia / Clostridiales / Ruminococcaceae / Ethanoligenens. / 180 2
Clostridium difficile BI1 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptostreptococcaceae. / 12 0
Clostridium difficile BI1 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptostreptococcaceae. / 341 7
Clostridium difficile BI1 plasmid pCDBI1 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptostreptococcaceae. / 5 0
Filifactor alocis ATCC 35896 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptostreptococcaceae / Filifactor. / 76 0
Thermincola potens JR Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Thermincola. / 139 0
Syntrophobotulus glycolicus DSM 8271 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Syntrophobotulus. / 242 1
Pelotomaculum thermopropionicum SI Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Pelotomaculum. / 145 12
Desulfotomaculum acetoxidans DSM 771 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfotomaculum. / 247 4
Desulfotomaculum carboxydivorans CO-1-SRB Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfotomaculum. / 132 3
Desulfotomaculum kuznetsovii DSM 6115 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfotomaculum. / 188 2
Desulfotomaculum reducens MI-1 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfotomaculum. / 155 10
Desulfotomaculum gibsoniae DSM 7213 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfotomaculum. / 273 8
Desulfosporosinus orientis DSM 765 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfosporosinus. / 432 4
Desulfosporosinus acidiphilus SJ4 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfosporosinus. / 301 4
Desulfosporosinus acidiphilus SJ4 plasmid pDESACI.01 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfosporosinus. / 2 0
Desulfosporosinus meridiei DSM 13257 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfosporosinus. / 280 3
Desulfitobacterium hafniense DCB-2 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfitobacterium. / 406 5
Desulfitobacterium hafniense Y51 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfitobacterium. / 438 15
Desulfitobacterium dehalogenans ATCC 51507 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfitobacterium. / 302 0
Desulfitobacterium dichloroeliminans LMG P-21439 Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Desulfitobacterium. / 212 2
Dehalobacter sp. CF Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Dehalobacter. / 180 11
Dehalobacter sp. DCA Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Dehalobacter. / 182 10
Candidatus Desulforudis audaxviator MP104C Bacteria / Firmicutes / Clostridia / Clostridiales / Peptococcaceae / Candidatus Desulforudis. / 69 2
Oscillibacter valericigenes Sjm18-20 Bacteria / Firmicutes / Clostridia / Clostridiales / Oscillospiraceae / Oscillibacter. / 356 4
Oscillibacter valericigenes Sjm18-20 plasmid pOBV01 Bacteria / Firmicutes / Clostridia / Clostridiales / Oscillospiraceae / Oscillibacter. / 4 0
Roseburia hominis A2-183 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Roseburia. / 236 1
Roseburia intestinalis M50/1 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Roseburia. / 234 45
Roseburia intestinalis XB6B4 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Roseburia. / 223 55
Coprococcus catus GD/7 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Coprococcus. / 207 34
Coprococcus sp. ART55/1 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Coprococcus. / 143 40
Clostridium lentocellum DSM 5427 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Cellulosilyticum. / 269 1
Butyrivibrio proteoclasticus B316 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Butyrivibrio. / 19 0
Butyrivibrio proteoclasticus B316 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Butyrivibrio. / 140 2
Butyrivibrio proteoclasticus B316 plasmid pCY186 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Butyrivibrio. / 9 0
Butyrivibrio proteoclasticus B316 plasmid pCY360 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Butyrivibrio. / 8 0
Butyrivibrio fibrisolvens 16/4 Bacteria / Firmicutes / Clostridia / Clostridiales / Lachnospiraceae / Butyrivibrio. / 144 23
Heliobacterium modesticaldum Ice1 Bacteria / Firmicutes / Clostridia / Clostridiales / Heliobacteriaceae / Heliobacterium. / 116 3
Eubacterium eligens ATCC 27750 Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Eubacterium. / 108 1
Eubacterium eligens ATCC 27750 plasmid unnamed Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Eubacterium. / 10 0
Eubacterium eligens ATCC 27750 plasmid unnamed Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Eubacterium. / 51 0
Eubacterium limosum KIST612 Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Eubacterium. / 349 1
Eubacterium rectale ATCC 33656 Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Eubacterium. / 220 0
Eubacterium rectale DSM 17629 Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Eubacterium. / 187 28
Eubacterium rectale M104/1 Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Eubacterium. / 184 33
Eubacterium siraeum 70/3 Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Eubacterium. / 139 25
Eubacterium siraeum V10Sc8a Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Eubacterium. / 118 21
Acetobacterium woodii DSM 1030 Bacteria / Firmicutes / Clostridia / Clostridiales / Eubacteriaceae / Acetobacterium. / 279 11
Symbiobacterium thermophilum IAM 14863 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiales Family XVIII. Incertae Sedis / Symbiobacterium. / 169 0
Thermaerobacter marianensis DSM 12885 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiales Family XVII. Incertae Sedis / Thermaerobacter. / 131 1
Sulfobacillus acidophilus TPY Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiales Family XVII. Incertae Sedis / Sulfobacillus. / 166 5
Sulfobacillus acidophilus DSM 10332 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiales Family XVII. Incertae Sedis / Sulfobacillus. / 167 7
Sulfobacillus acidophilus DSM 10332 plasmid unnamed Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiales Family XVII. Incertae Sedis / Sulfobacillus. / 4 0
Finegoldia magna ATCC 29328 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiales Family XI. Incertae Sedis / Finegoldia. / 73 2
Finegoldia magna ATCC 29328 plasmid pFMC Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiales Family XI. Incertae Sedis / Finegoldia. / 3 0
Anaerococcus prevotii DSM 20548 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiales Family XI. Incertae Sedis / Anaerococcus. / 90 0
Anaerococcus prevotii DSM 20548 plasmid pAPRE01 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiales Family XI. Incertae Sedis / Anaerococcus. / 7 0
Clostridium acetobutylicum ATCC 824 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 250 1
Clostridium acetobutylicum ATCC 824 plasmid pSOL1 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 22 0
Clostridium acetobutylicum DSM 1731 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 257 1
Clostridium acetobutylicum DSM 1731 plasmid pSMBa Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 22 0
Clostridium beijerinckii NCIMB 8052 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 486 3
Clostridium botulinum A str. ATCC 19397 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 271 1
Clostridium botulinum A str. ATCC 3502 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 261 5
Clostridium botulinum A str. Hall Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 256 2
Clostridium botulinum A2 str. Kyoto Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 286 3
Clostridium botulinum A3 str. Loch Maree Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 281 5
Clostridium botulinum A3 str. Loch Maree plasmid pCLK Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 8 0
Clostridium botulinum B str. Eklund 17B Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 210 1
Clostridium botulinum B str. Eklund 17B plasmid pCLL Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 6 0
Clostridium botulinum B1 str. Okra Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 281 5
Clostridium botulinum B1 str. Okra plasmid pCLD Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 3 0
Clostridium botulinum Ba4 str. 657 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 261 4
Clostridium botulinum Ba4 str. 657 plasmid pCLJ Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 9 0
Clostridium botulinum BKT015925 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 134 0
Clostridium botulinum BKT015925 plasmid p1BKT015925 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 12 0
Clostridium botulinum BKT015925 plasmid p2BKT015925 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 10 1
Clostridium botulinum BKT015925 plasmid p3BKT015925 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 7 0
Clostridium botulinum BKT015925 plasmid p4BKT015925 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 2 1
Clostridium botulinum BKT015925 plasmid p5BKT015925 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 2 0
Clostridium botulinum E3 str. Alaska E43 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 191 1
Clostridium botulinum F str. Langeland Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 282 2
Clostridium botulinum F str. Langeland plasmid pCLI Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 3 0
Clostridium cellulolyticum H10 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 185 4
Clostridium cellulovorans 743B Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 297 3
Clostridium clariflavum DSM 19732 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 196 3
Clostridium difficile 630 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 356 8
Clostridium difficile CD196 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 323 18
Clostridium difficile R20291 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 334 19
Clostridium kluyveri DSM 555 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 287 12
Clostridium kluyveri DSM 555 plasmid pCKL555A Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 5 0
Clostridium kluyveri NBRC 12016 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 276 13
Clostridium kluyveri NBRC 12016 plasmid pCKL1 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 3 1
Clostridium ljungdahlii DSM 13528 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 354 3
Clostridium novyi NT Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 117 0
Clostridium perfringens ATCC 13124 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 155 0
Clostridium perfringens str. 13 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 138 3
Clostridium perfringens str. 13 plasmid pCP13 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 5 0
Clostridium phytofermentans ISDg Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 311 3
Clostridium saccharolyticum WM1 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 345 6
Clostridium sp. SY8519 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 193 4
Clostridium sticklandii DSM 519 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 129 0
Clostridium tetani E88 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 145 23
Clostridium tetani E88 plasmid pE88 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 5 1
Clostridium thermocellum ATCC 27405 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 154 2
Clostridium acetobutylicum EA 2018 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 256 2
Clostridium acetobutylicum EA 2018 plasmid EA2018plasmid Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 22 0
Clostridium botulinum F str. 230613 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 270 12
Clostridium botulinum F str. 230613 plasmid pCBF Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 3 0
Clostridium botulinum H04402 065 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 270 5
Clostridium sp. BNL1100 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 249 1
Clostridium thermocellum DSM 1313 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 128 1
Clostridium acidurici 9a Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 206 9
Clostridium cf. saccharolyticum K10 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 207 50
Clostridium pasteurianum BC1 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 323 5
Clostridium pasteurianum BC1 plasmid pCLOPA01 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 5 0
Clostridium saccharoperbutylacetonicum N1-4(HMT) Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 504 7
Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 2 0
Clostridium autoethanogenum DSM 10061 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 329 5
Clostridium saccharobutylicum DSM 13864 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 312 6
Clostridium tetani 12124569 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 172 1
Clostridium tetani 12124569 plasmid p12124569 Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Clostridium. / 5 0
Candidatus Arthromitus sp. SFB-mouse-Japan Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Candidatus Arthromitus. / 64 0
Candidatus Arthromitus sp. SFB-rat-Yit Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Candidatus Arthromitus. / 47 1
Candidatus Arthromitus sp. SFB-mouse-Yit Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Candidatus Arthromitus. / 57 2
Alkaliphilus metalliredigens QYMF Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Alkaliphilus. / 315 2
Alkaliphilus oremlandii OhILAs Bacteria / Firmicutes / Clostridia / Clostridiales / Clostridiaceae / Alkaliphilus. / 206 1


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Date : 10 November 2024, 20:22:02 - Licence CeCILL-C (EN - FR)- Copyright/Mentions legales